function main()

rnaseqflow.__main__.main()

This method is installed as a console script entry point by setuptools

It uses the command line arguments specified by opts() to generate a Workflow object and adds to it several WorkflowStages.

If the needed command line arguments are not passed, the user is asked to enter them.

The generated Workflow object is then executed with run()

function opts()

rnaseqflow.__main__.opts()